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CSIM Class List

Here are the classes, structs, unions and interfaces with brief descriptions:
AChannel_Hoffman97From: Hoffman, D., Magee, J.C., Colbert, C.M., and Johnston, D. Potassium channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature 387:869-875 (1997)
AChannel_Korngreen02From: Korngreen A, Sakmann B.Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. J Physiol. 2000 Jun 15;525 Pt 3:621-39
ActiveCaChannelIon channel that contributes to the intracellular calcium concentration
ActiveChannelBase Class for all active ionic channels using ion gates
AdvancableBase class for all objects to simulate
AhGate_Hoffman97From: Hoffman, D., Magee, J.C., Colbert, C.M., and Johnston, D. Potassium channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature 387:869-875 (1997)
AHP_ChannelBase Class for all active ionic channels using ion gates
AlGate_Korngreen02From: Korngreen A, Sakmann B.Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. J Physiol. 2000 Jun 15;525 Pt 3:621-39
AmGate_Hoffman97From: Hoffman, D., Magee, J.C., Colbert, C.M., and Johnston, D. Potassium channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature 387:869-875 (1997)
AnalogInputNeuronAn object which outputs a predefined analog signal
AnalogNeuronBase class for all analog neurons
AnalogNeuron::QueueQueue for delaying the output of analog synapses
AnalogSynapseBase class of all analog synapses
AnalogTeacherTeacher for a pool of analog neurons (all teached with the same signal)
AnGate_Korngreen02From: Korngreen A, Sakmann B.Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. J Physiol. 2000 Jun 15;525 Pt 3:621-39
bNACNeuronConductance based spiking neuron ...
bNACOUNeuronConductance based spiking neuron ...
CaChannel_Yamada98From: Yamada, Koch and Adams: Multiple Channels and Calcium Dynamics, Editors: Koch, Segev, MIT Press 1998)
cACNeuronConductance based spiking neuron ...
cACOUNeuronConductance based spiking neuron ...
CaGate_Yamada98From: Yamada, Koch and Adams: Multiple Channels and Calcium Dynamics, Editors: Koch, Segev, MIT Press 1998)
CALChannel_Destexhe98From: Destexhe A, Contreras D, Steriade M. Mechanisms underlying the synchronizing action of corticothalamic feedback through inhibition of thalamic relay cells. J Neurophysiol. 1998 Feb;79(2):999-1016
CALhGate_Destexhe98From: Destexhe A, Contreras D, Steriade M. Mechanisms underlying the synchronizing action of corticothalamic feedback through inhibition of thalamic relay cells. J Neurophysiol. 1998 Feb;79(2):999-1016
CALmGate_Destexhe98From: Destexhe A, Contreras D, Steriade M. Mechanisms underlying the synchronizing action of corticothalamic feedback through inhibition of thalamic relay cells. J Neurophysiol. 1998 Feb;79(2):999-1016
CbHHOuINeuronA single compartment neuron with an arbitrary number of channels, current supplying synapses and spike template
CbHHOuNeuronA single compartment neuron with an arbitrary number of channels, current supplying synapses and spike template
CbNeuronA single compartment neuron with an arbitrary number of channels and current supplying synapses
CbNeuronStA single compartment neuron with an arbitrary number of channels, current supplying synapses and spike template
CbStOuNeuronA single compartment neuron with an arbitrary number of channels, current supplying synapses and spike template
ConcIonGateGeneric first order kinitics ion concentration dependend ion gate
csimAnalogInputClassBase class for all analog input channel receiving classes like AnalogInputNeuron or AnalogTeacher
csimClassInfoHolds information about a class like name, description and field informations
csimClassInfoDBA database/dictionary of all classes with accessable fields
csimErrorClass for managing formated error messages
csimFieldInfoHolds information about a field of a class
csimInputChannelStructure representing an analog or spiking signal channel
csimInputClassBase class for all input channel receiving classes like AnalogInputNeuron or SpikingInputNeuron
csimList< T, inc >Template class for storing an array of pointers
csimRecorderImplements an object which can record fields from other objects
csimRecorder::RecFieldStores information about a field to recored from
csimSpikingInputClassBase class for all spiking input channel receiving classes like SpikingInputNeuron or SpikingTeacher
dNACNeuronConductance based spiking neuron ...
dNACOUNeuronConductance based spiking neuron ...
DynamicAnalogSynapseImplements dynamic analog synapses
DynamicSpikingCbSynapseA dynamic spiking synapse (see Markram et al, 1998)
DynamicSpikingSynapseA dynamic spiking synapse (see Markram et al, 1998)
DynamicStdpSynapseBase class for all dynamic spiking synapses with spike time dependent plasticity (STDP)
ExtInputNeuronImplements an external (analog) input neuron
ExtOutLifNeuronA LIF neuron which writes its output to some external program
ExtOutLinearNeuronA linear neuron which writes its output to some external program
ExtOutSigmoidalNeuronA sigmoidal neuron which writes its output to some external program
ForceableClass Teacher) to produce a given target output
GVD_cT_GateA generic voltage dependent ion gate with constant time constant
GVD_GateA generic voltage dependent ion gate
HChannel_Stuart98From: Stuart G, Spruston N. Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. J Neurosci. 1998 May 15;18(10):3501-10
HH_h_GateH gate for the fast HH sodium Na channel
HH_K_ChannelHodgkin and Huxley fast potassium (K) channel for AP generation
HH_m_GateM gate for the fast HH sodium (Na) channel
HH_n_GateN gate for the fast HH potassium (K) channel
HH_Na_ChannelHodgkin and Huxley fast sodium (Na) channel for AP generation
HHNeuronConductance based spiking neuron using the HH squid modell
HnGate_Stuart98From: Stuart G, Spruston N. Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. J Neurosci. 1998 May 15;18(10):3501-10
HVACAChannel_Brown93See also: Seamans JK, Durstewitz D, Christie BR, Stevens CF, Sejnowski TJ. Dopamine D1/D5 receptor modulation of excitatory synaptic inputs to layer V prefrontal cortex neurons. Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):301-6
HVACAuGate_Brown93See also: Seamans JK, Durstewitz D, Christie BR, Stevens CF, Sejnowski TJ. Dopamine D1/D5 receptor modulation of excitatory synaptic inputs to layer V prefrontal cortex neurons. Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):301-6
HVACAvGate_Brown93See also: Seamans JK, Durstewitz D, Christie BR, Stevens CF, Sejnowski TJ. Dopamine D1/D5 receptor modulation of excitatory synaptic inputs to layer V prefrontal cortex neurons. Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):301-6
IonBufferAn ion buffer handling the ion concentration of multiple ionic input currents and outward pump
IonChannelBase class for all ionic channels
IonGateGeneric first order kinetics ion gate template
KCAChannel_Mainen96From: Mainen ZF, Sejnowski TJ. Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 1996 Jul 25;382(6589):363-6
KCAnGate_Mainen96From: Mainen ZF, Sejnowski TJ. Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 1996 Jul 25;382(6589):363-6
KChannel_Korngreen02From: Korngreen A, Sakmann B.Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. J Physiol. 2000 Jun 15;525 Pt 3:621-39
KDnGate_Traub91From: Traub RD, Miles R (1991): Neuronal Networks of the Hippocampus, Cambridge University Press, New York
KlGate_Korngreen02From: Korngreen A, Sakmann B.Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. J Physiol. 2000 Jun 15;525 Pt 3:621-39
KnGate_Korngreen02From: Korngreen A, Sakmann B.Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. J Physiol. 2000 Jun 15;525 Pt 3:621-39
LifNeuronA leaky-integrate-and-fire (I&F) neuron
LinearNeuronA linear neuron: simply summing up the inputs
MChannel_Mainen96From: Mainen ZF, Sejnowski TJ. Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 1996 Jul 25;382(6589):363-6
MChannel_Wang98From: Wang, H.-S., Pan, Z., Shi, W., Brown, B. S., Wymore, R.S., Cohen, I. S., Dixon, J. E. and McKinnon, D. (1998) KCNQ2 and KCNQ3Potassium Channel Subunits: Molecular Correlates of the M-Channel. Science, 282, 1890-1893
MembranePatchA a patch of membrane with an arbitrary number of channels and current supplying synapses
MembranePatchSimpleA a path of membrane with an arbitrary number of channels and current supplying synapses
MexNetworkIn addition to the class Network it provides specific methods for the Matlab MEX interface
MexRecorderAlias for Recorder for backwards compatibility
MmGate_Wang98From: Wang, H.-S., Pan, Z., Shi, W., Brown, B. S., Wymore, R.S., Cohen, I. S., Dixon, J. E. and McKinnon, D. (1998) KCNQ2 and KCNQ3Potassium Channel Subunits: Molecular Correlates of the M-Channel. Science, 282, 1890-1893
MnGate_Mainen96From: Mainen ZF, Sejnowski TJ. Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 1996 Jul 25;382(6589):363-6
MpGate_Mainen96origFrom: Mainen ZF, Joerges J, Huguenard JR, Sejnowski TJ.,A model of spike initiation in neocortical pyramidal neurons.,Neuron. 1995 Dec;15(6):1427-39
NAhGate_Traub91From: Traub RD, Miles R (1991): Neuronal Networks of the Hippocampus, Cambridge University Press, New York
NAmGate_Traub91From: Traub RD, Miles R (1991): Neuronal Networks of the Hippocampus, Cambridge University Press, New York
NeedsPostSpikeSynapseInterface for synapses which will receive a postsynaptic spike
NetworkContainer class for a network of neurons and synapses
Network::eventStructure for memory management of the event/spike driven part of the simulation
NeuronBase class of all neurons
NPChannel_McCormick02Methods in Neuronal Modeling: From Ions to Networks, 2nd edition, Christof Koch and Idan Segev, eds, MIT Press, Cambridge, Mass., 1998,
NPmGate_McCormick92Methods in Neuronal Modeling: From Ions to Networks, 2nd edition, Christof Koch and Idan Segev, eds, MIT Press, Cambridge, Mass., 1998,
RecorderRecords fields from arbitrary objects during simulation
SICChannel_Maciokas02From: Maciokas, J., Goodman, P., Kenyon, J., Accurate Dynamical Model of Interneuronal GABAergic Channel Physiologies
SIChGate_Maciokas02From: Maciokas, J., Goodman, P., Kenyon, J., Accurate Dynamical Model of Interneuronal GABAergic Channel Physiologies
SICmGate_Maciokas02From: Maciokas, J., Goodman, P., Kenyon, J., Accurate Dynamical Model of Interneuronal GABAergic Channel Physiologies
SigmoidalNeuronAn analog neuron with a sigmoidal activation function
SpikingInputNeuronA spiking neuron which emits a predefined spike train
SpikingNeuronBase class for all spiking neurons, i.e. spike emitting objects
SpikingSynapseBase class of all spike transmitting synapses
SpikingTeacherTeacher for a pool of spiking neurons
StaticAnalogCbSynapseIts input is the synaptic conductance and its output is the PSC
StaticAnalogSynapseA synapse which transmitts analog values (no dynamics)
StaticSpikingCbSynapseA static spike transmitting synapse (no synaptic dynamics)
StaticSpikingSynapseA static spike transmitting synapse (no synaptic dynamics)
StaticStdpSynapseA STDP synapse with no synaptic short time dynamics, i.e. no depression and no facilitation
StdpSynapseBase class for all spiking synapses with spike time dependent plasticity (STDP)
SynapseBase class of all synapses
SynapseTargetBase class for all classes which are potential synaptic targets
SynapticChannelIonChannel which transforms spikes into conductance changes
TeacherContainer class for a set of objects subject to teacher forcing
VIonGateGeneric first order kinitics voltage dependend ion gate